{"id":37213,"date":"2024-07-17T10:09:35","date_gmt":"2024-07-17T17:09:35","guid":{"rendered":"https:\/\/www.novogene.com\/eu-en\/?page_id=37213"},"modified":"2025-08-08T00:34:39","modified_gmt":"2025-08-08T07:34:39","slug":"spatial-transcriptomics","status":"publish","type":"page","link":"https:\/\/www.novogene.com\/eu-en\/services\/research-services\/transcriptome-sequencing\/spatial-transcriptomics\/","title":{"rendered":"Spatial Transcriptomics"},"content":{"rendered":"<div class=\"clear_p\" style=\"float: right;margin: 0 0 20px 50px\"><img decoding=\"async\" class=\"clear_img\" style=\"width: 286px;min-height: 180px\" src=\"https:\/\/www.novogene.com\/eu-en\/wp-content\/uploads\/sites\/7\/2024\/07\/iStock-467700154-1.jpg\" alt=\"\" \/><\/p>\n<div class=\"col-sm-12 m-auto text-center\" style=\"padding-top: 20px;padding-left: 0\"><span style=\"float: left;background: #3f6992;height: 2.6875rem;width: 2.875rem\"><img decoding=\"async\" style=\"margin-top: 0.25rem\" src=\"https:\/\/www.novogene.com\/eu-en\/wp-content\/uploads\/sites\/7\/2021\/01\/Novogene-button-icon-20210129.png\" \/><\/span><\/p>\n<div id=\"top_btn\" class=\"blue btn\" style=\"margin-top: 0px;padding: 8px 1.1875rem;float: left;background: #3789C7;border: none;line-height: 1.6875rem;width:241px;\"><a class=\"\" href=\"https:\/\/www.novogene.com\/eu-en\/wp-content\/uploads\/sites\/7\/2025\/08\/Spatial-Transcriptomic-Service-Flyer.pdf\">Service Flyer<\/a><\/div>\n<\/div>\n<\/div>\n<p class=\"blue-box\" style=\"width: 70%;background-color: #e2f2ff!important;padding: 20px;font-family: 'Montserrat-Regular', Arial;color: #032e53;font-size: 16px\">Spatial transcriptomics is a powerful technique that allows researchers to <strong>visualize and analyze gene expression patterns<\/strong> at <strong>distinct spatial locations within a tissue<\/strong>. By combining transcriptomics with imaging techniques, spatial transcriptomics provides insights into the spatial organization of cells within a tissue as well as their gene expression patterns in various biological contexts. Spatial transcriptomics enables the analysis of <strong>spatiotemporal gene expression patterns<\/strong>, <strong>inter-cellular interactions<\/strong>, <strong>cell differentiation<\/strong>, to name a few.<\/p>\n<p style=\"line-height: 24px\" class=\"novo-p-strong\">Novogene\u2019s spatial transcriptomics service is powered by the <strong><a href=\"https:\/\/www.10xgenomics.com\/products\/hd-wt-panel-gene-expression\">10X Genomics\u2019 Visium HD WT Panel Gene Expression<\/a><\/strong>, which delivers\u00a0<strong>whole transcriptome spatial gene expression at single-cell resolution<\/strong>, enabling researchers to explore tissues using novel techniques. With\u00a0<strong>no gaps in tissue coverage<\/strong>\u00a0and<strong> 6.5 x 6.5 mm dual capture areas per slide<\/strong>, this new platform brings your FFPE tissue analysis into ultra-high definition.\u00a0This probe-based gene expression profiling technology from 10X Genomics is designed specifically for FFPE samples and targets approximately <strong>18,000 genes in humans<\/strong> and <strong>20,000 genes in mice<\/strong>, providing information on the whole transcriptome. Novogene also utilizes the <strong>Visium CytAssist<\/strong> platform for facilitating the transfer of the transcriptomic probes from the glass slide to a capture area on the Visium slide, thus minimizing mislocalization and maintaining spatiality.<\/p>\n<p><img decoding=\"async\" src=\"https:\/\/www.novogene.com\/eu-en\/wp-content\/uploads\/sites\/7\/2025\/07\/Picture1.png\"\/><\/p>\n<h2 style=\"margin-bottom: 12px;\">Our\u00a0end-to-end Visium HD service includes:\u00a0<\/h2>\n<ul class=\"novo-ul-strong\">\n<li>Sample preparation (tissue sectioning from FFPE blocks)<\/li>\n<li>Sample QC (Hematoxylin &amp; Eosin staining and imaging, RNA integrity measurement)\u00a0<\/li>\n<li>Probe transfer via\u00a0<strong>Visium CytAssist\u00a0<\/strong><\/li>\n<li>Library preparation and sequencing on the\u00a0<strong>Illumina NovaSeq X Plus\u00a0<\/strong><\/li>\n<li>Full data analysis: Space Ranger, Seurat, DEGs, and functional enrichment\u00a0<\/li>\n<\/ul>\n<p class=\"novo-p-strong\">Our seamless end-to-end service includes sample QC, sample preparation, staining, imaging, sequencing on the latest\u00a0<a href=\"https:\/\/www.novogene.com\/eu-en\/technology\/platforms\/\">Illumina NovaSeq X Plus<\/a>, and comprehensive data analysis, complete with \u201cpublication-ready\u201d images. Spatial transcriptomics using Visium HD has found its applications in several fields, including cancer research, developmental biology, and the neurosciences.<\/p>\n<style>\n#demoresultbtn{display:none;}\n.novo-p-strong strong{font-family: 'Merriweather-Bold', Arial;}\n<\/style>\n<p><script type=\"text\/javascript\">\n$(document).ready(function(){$(\"#demoresultbtn\").parent().remove()});\n<\/script><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Service Flyer Spatial transcriptomics is a powerful technique that allows researchers to visualize and analyze gene expression patterns at distinct spatial locations within a tissue. By combining transcriptomics with imaging techniques, spatial transcriptomics provides insights into the spatial organization of cells within a tissue as well as their gene expression patterns in various biological contexts.<\/p>\n","protected":false},"author":14,"featured_media":37214,"parent":2120,"menu_order":168,"comment_status":"closed","ping_status":"closed","template":"templates\/page-technical2.php","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v20.8 (Yoast SEO v20.8) - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Spatial Transcriptomics - Novogene<\/title>\n<meta name=\"description\" content=\"Novogene\u2019s spatial transcriptomics end-to end service workflow is supported by 10x Genomics Visium CytAssist. It couples probe-based transcriptomics with tissue morphology, facilitating a complete view of disease complexity, spatiotemporal mapping of gene expression, and the discovery of biomarkers, novel cell types and states. The technology targets approximately 18,000 genes in humans and 20,000 genes in mice, providing information about the whole transcriptome.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.novogene.com\/eu-en\/services\/research-services\/transcriptome-sequencing\/spatial-transcriptomics\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Spatial Transcriptomics\" \/>\n<meta property=\"og:description\" content=\"Novogene\u2019s spatial transcriptomics end-to end service workflow is supported by 10x Genomics Visium CytAssist. It couples probe-based transcriptomics with tissue morphology, facilitating a complete view of disease complexity, spatiotemporal mapping of gene expression, and the discovery of biomarkers, novel cell types and states. The technology targets approximately 18,000 genes in humans and 20,000 genes in mice, providing information about the whole transcriptome.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.novogene.com\/eu-en\/services\/research-services\/transcriptome-sequencing\/spatial-transcriptomics\/\" \/>\n<meta property=\"og:site_name\" content=\"Novogene\" \/>\n<meta property=\"article:modified_time\" content=\"2025-08-08T07:34:39+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.novogene.com\/eu-en\/wp-content\/uploads\/sites\/7\/2024\/07\/iStock-467700154-1.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"2138\" \/>\n\t<meta property=\"og:image:height\" content=\"1402\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.novogene.com\/eu-en\/services\/research-services\/transcriptome-sequencing\/spatial-transcriptomics\/\",\"url\":\"https:\/\/www.novogene.com\/eu-en\/services\/research-services\/transcriptome-sequencing\/spatial-transcriptomics\/\",\"name\":\"Spatial Transcriptomics - Novogene\",\"isPartOf\":{\"@id\":\"https:\/\/www.novogene.com\/eu-en\/#website\"},\"datePublished\":\"2024-07-17T17:09:35+00:00\",\"dateModified\":\"2025-08-08T07:34:39+00:00\",\"description\":\"Novogene\u2019s spatial transcriptomics end-to end service workflow is supported by 10x Genomics Visium CytAssist. 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